
AC:
F0=Current run setup or parameter file which saves and restores the plot.
F1=1st electron density file from which cell parameters are used.
F2=2nd electron density file which may have a different grid definition.
F3=3rd electron density file which may have a different grid definition.
F4=4th electron density file which may have a different grid definition.
F5=Symmetry file with 1 operator/line: x1,y1,z1,t1,x2,y2,z2,t2,x3,y3,z3,t3.
F6=1st Atom file with 1 atom/line: ACID,RESIDUE_NUMBER,ATOM_ID,X,Y,Z
F7=2nd Atom file with 1 atom/line: ACID,RESIDUE_NUMBER,ATOM_ID,X,Y,Z
F8=Auxiliary layout file to save and restore the layout if invoked.
GT=Graph title (max 77 characters).
AT=Atom ID at which the contour box center is located.
AX=Send graph orientation axes to the hardcopy or not.
MP=Contour the density maps or not.
SY=Draw sphered-in symmetry related atoms or not.
L6=FORTRAN line format in sequence of ACID,RESIDUE_NUMBER,ATOM_ID,X,Y,Z.
L7=FORTRAN line format in sequence of ACID,RESIDUE_NUMBER,ATOM_ID,X,Y,Z.
O6=Atom coordinates in the 1st atom file are orthogonal or not.
O7=Atom coordinates in the 2nd atom file are orthogonal or not.
A6=Atom coordinates in the 1st atom file are in angstrom or not.
A7=Atom coordinates in the 2nd atom file are in angstrom or not.
R6=Atom IDs (1 or 2 letters) to be excluded from atom list for plotting.
R7=Atom IDs (1 or 2 letters) to be excluded from atom list for plotting.
DS=Bond connection of the 2nd atomic model is in dash-line or not.
HB=Search and connect hydrogen bonds or not.
RO=Graph rotations (x,y,z) in degrees around the box origin.
OO=Contour box origin (a/x,b/y,c/z) in angstrom units.
SC=Plot scale factor in inches per angstrom.
SL=Slab or z-clip semi-extent in angstrom from the origin (SL=0.0: no slab).
SA=Stereo angle in degs (e.g. 7 for glasses, -7 for cross-eyes, 0 for mono).
CP=Unit cell parameters (a, b, c, alpha, beta, gamma in angstroms and degs).
ON=4 contour level on/off flags: 0=skip the level, 1=contour the level.
CL=4 contour levels (default to 1,2,3,4 sigma values of the 1st map).
BX=Contour box dimension (a/x,b/y,c/z) in angstroms.
CC=4 contour colors in pen code.
LI=4 contour line types (1 through 8).
BL=4 contour boldline indices (1 through 9).
N6=Range of atoms in sequence in the 1st atom file to plot (override SR).
N7=Range of atoms in sequence in the 2nd atom file to plot (override SR).
SR=Sphere radius around the box origin in angstrom for drawing the models.
CM=Color number for the symmetry-independent part of the models(1st,2nd).
CS=Color number fot the symmetry-related part of the models(1st,2nd).
CD=Color number for drawing atom IDs (1st,2nd models).
CH=Color number for drawing hydrogen/dash bonds (1st,2nd models).
BM=Boldline indices for drawing the entire models(1st,2nd).
ID=Atom ID types: 0=No,1=All,2=#,3=Atom,4=CA-#,5=CA-3L-Acid,6=CA-1L-Acid.
R1=Bond length cutoff for non-hydrogen atom connection.
R2=Bond length cutoff for hydrogen atom connection.
HC=Bond length cutoff for hydrogen bond search and drawing.
IN=Character size in inches for drawing atom IDs.
DL=Dash length in angstrom for drawing hydrogen bonds and dash bonds.
OS=Offsets in angstrom along a, b, c axes for drawing atom IDs.
